flirt {fslr} | R Documentation |
Register using FLIRT
Description
This function calls flirt
to register infile to reffile
and either saves the image or returns an object of class nifti, along with the
transformation matrix omat
Usage
flirt(
infile,
reffile,
omat = NULL,
dof = 6,
outfile = NULL,
retimg = TRUE,
reorient = FALSE,
intern = FALSE,
opts = "",
verbose = TRUE,
...
)
Arguments
infile |
(character) input filename |
reffile |
(character) reference image to be registered to |
omat |
(character) Output matrix name |
dof |
(numeric) degrees of freedom (default 6 - rigid body) |
outfile |
(character) output filename |
retimg |
(logical) return image of class nifti |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) pass to |
opts |
(character) additional options to FLIRT |
verbose |
(logical) print out command before running |
... |
additional arguments passed to |
Value
character or logical depending on intern
[Package fslr version 2.25.3 Index]