reconner {freesurfer}

Reconstruction Helper for recon from Freesurfer

Description

Wrapper for the recon-all function in Freesurfer

Usage

reconner(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  force = FALSE
)

Arguments

infile

Input filename (dcm or nii)

outdir

Output directory

subjid

subject id

verbose

print diagnostic messages

opts

Additional options

force

Force running of the reconstruction

Value

Result of system

Note

If you set infile = NULL, then you can omit the -i flag in recon-all