recon_con1 {freesurfer} | R Documentation |
Reconstruction from Motion Correction to Skull Strip
Description
Reconstruction from Freesurfer for Step 1-5
(Motion Correction to Skull Strip), which calls -autorecon1
in recon-all
Usage
recon_con1(infile, outdir = NULL, subjid, verbose = TRUE)
autorecon1(infile, outdir = NULL, subjid, verbose = TRUE)
recon_con2(infile, outdir = NULL, subjid, verbose = TRUE)
autorecon2(infile, outdir = NULL, subjid, verbose = TRUE)
recon_con3(infile, outdir = NULL, subjid, verbose = TRUE)
autorecon3(infile, outdir = NULL, subjid, verbose = TRUE)
Arguments
infile |
Input filename (dcm or nii) |
outdir |
Output directory |
subjid |
subject id |
verbose |
print diagnostic messages |
Value
Result of system
Note
See https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all for the
steps of each autorecon1-3
.
If you set infile = NULL
, then you can omit the
-i
flag in recon-all
.
[Package freesurfer version 1.6.10 Index]