recon_all {freesurfer}

Reconstruction from Freesurfer for All Steps

Description

Reconstruction from Freesurfer for All Steps

Usage

recon_all(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  ...
)

Arguments

infile

Input filename (dcm or nii)

outdir

Output directory

subjid

subject id

verbose

print diagnostic messages

opts

Additional options

...

arguments passed to reconner

Value

Result of system

Note

If you would like to restart a recon-all run, change opts so that opts = "-make all"