read_fs_table {freesurfer} | R Documentation |
Read Freesurfer Table Output
Description
This function reads output from a Freesurfer table command,
e.g. aparcstats2table
, asegstats2table
Usage
read_fs_table(file, sep = NULL, stringsAsFactors = FALSE, header = TRUE, ...)
Arguments
file |
(character path) filename of text file |
sep |
separator to override attribute of file, to
pass to |
stringsAsFactors |
(logical) passed to |
header |
Is there a header in the data |
... |
additional arguments to |
Value
data.frame
from the file
Examples
if (have_fs()) {
outfile = aparcstats2table(subjects = "bert",
hemi = "lh",
meas = "thickness")
df = read_fs_table(outfile)
seg_outfile = asegstats2table(subjects = "bert", meas = "mean")
df_seg = read_fs_table(seg_outfile)
}
## Not run:
### using the pipe
if (requireNamespace("magrittr", quietly = TRUE)) {
df_seg = asegstats2table(subjects = "bert", meas = "mean") %>%
read_fs_table
}
## End(Not run)
[Package freesurfer version 1.6.10 Index]