R: Extract data or residuals from a fmridata object

extractData {fmri}

R Documentation

Extract data or residuals from a fmridata object

Description

The function extracts data stored as raw within an object of class 'fmridata'.

Usage

extractData(z, what = "data", maskOnly = FALSE)
expandfMRI(z)
condensefMRI(z, mask)

Arguments

`z`	an object of class 'fmridata'
`what`	either `"data"` or `"residuals"`.
`maskOnly`	logical: if TRUE only values within the brain mask will be returned.
`mask`	logical brain mask

Details

The function extractData extracts data stored as raw within an object of class 'fmridata'. Functions expandfMRI and condensefMRI change the way data and residuals are stored between full 3D data and data within a brain mask. condensefMRI can also be used to set a more restrictive brain mask.

Value

In case of function extractData an array of dimension data$dim containing either the fmri-data or residuals. The other two functions return an object of class 'fmridata'.

Author(s)

Joerg Polzehl polzehl@wias-berlin.de