StatMixRHLP-class {flamingos} | R Documentation |
A Reference Class which contains statistics of a mixture of RHLP models.
Description
StatMixRHLP contains all the statistics associated to a MixRHLP model, in particular the E-Step (and C-Step) of the (C)EM algorithm.
Fields
pi_jkr
Array of size
(nm, R, K)
representing the logistic proportion for cluster k.tau_ik
Matrix of size
(n, K)
giving the posterior probabilities (fuzzy segmentation matrix) that the curve\boldsymbol{y}_{i}
originates from thek
-th RHLP model.z_ik
Hard segmentation logical matrix of dimension
(n, K)
obtained by the Maximum a posteriori (MAP) rule:z\_ik = 1 \ \textrm{if} \ z\_i = \textrm{arg} \ \textrm{max}_{k} \ tau\_ik;\ 0 \ \textrm{otherwise}
.klas
Column matrix of the labels issued from
z_ik
. Its elements areklas[i] = z\_i
,i = 1,\dots,n
.gamma_ijkr
Array of size
(nm, R, K)
giving the posterior probabilities that the observation\boldsymbol{y}_{ij}
originates from ther
-th regime of thek
-th RHLP model.polynomials
Array of size
(m, R, K)
giving the values of the estimated polynomial regression components.weighted_polynomials
Array of size
(m, R, K)
giving the values of the estimated polynomial regression components weighted by the prior probabilitiespi_jkr
.Ey
Matrix of size (m, K).
Ey
is the curve expectation (estimated signal): sum of the polynomial components weighted by the logistic probabilitiespi_jkr
.loglik
Numeric. Observed-data log-likelihood of the MixRHLP model.
com_loglik
Numeric. Complete-data log-likelihood of the MixRHLP model.
stored_loglik
Numeric vector. Stored values of the log-likelihood at each EM iteration.
stored_com_loglik
Numeric vector. Stored values of the Complete log-likelihood at each EM iteration.
BIC
Numeric. Value of BIC (Bayesian Information Criterion).
ICL
Numeric. Value of ICL (Integrated Completed Likelihood).
AIC
Numeric. Value of AIC (Akaike Information Criterion).
log_fk_yij
Matrix of size
(n, K)
giving the values of the probability density functionf(\boldsymbol{y}_{i} | z_i = k, \boldsymbol{x}, \boldsymbol{\Psi})
,i = 1,\dots,n
.log_alphak_fk_yij
Matrix of size
(n, K)
giving the values of the logarithm of the joint probability density functionf(\boldsymbol{y}_{i}, \ z_{i} = k | \boldsymbol{x}, \boldsymbol{\Psi})
,i = 1,\dots,n
.log_gamma_ijkr
Array of size
(nm, R, K)
giving the logarithm ofgamma_ijkr
.
Methods
computeStats(paramMixRHLP)
Method used in the EM algorithm to compute statistics based on parameters provided by the object
paramMixRHLP
of class ParamMixRHLP.CStep(reg_irls)
Method used in the CEM algorithm to update statistics.
EStep(paramMixRHLP)
Method used in the EM algorithm to update statistics based on parameters provided by the object
paramMixRHLP
of class ParamMixRHLP (prior and posterior probabilities).MAP()
MAP calculates values of the fields
z_ik
andklas
by applying the Maximum A Posteriori Bayes allocation rule.z\_ik = 1 \ \textrm{if} \ z\_i = \textrm{arg} \ \textrm{max}_{k} \ tau\_ik;\ 0 \ \textrm{otherwise}
.