cghInfo {fcros} | R Documentation |
Example of aCGH "info file" for the fcros package.
Description
This dataset is part of the Agilent 244K design array probes description file which is used in the publicatin of Sircoulomb et al. 2010, BMC Cancer, 10:539. For our illustration, we used only 3 chromosomes (7, 8 and 9) data. The complete data are available in the file "GPL9158-3352.txt", see the Gene Expression Omnibus website and accession number GSE17907.
Usage
data(cghInfo)
Format
A data frame with 33,3613 rows for 7 columns with information on probes.
Index
:a numeric used for the probe
ProbeName
:a text for the unique probe ID
GeneSymbol
:a text with the gene symbol associated with the probe
Chromosome
:a text with the chromosome index associated with the probe
Start
:a start position value for the sequence associated with the probe
End
:an end position value for the sequence associated with the probe
Cytoband
:a text for the cytoband associated with the probe
Details
This is a part of information obtained from the Agilent 244K design array probes description file.
References
F Sircoulomb, I Bekhouche, P Finetti, J Adelaide, AB Hamida, J Bonansea, S Raynaud, C Innocenti, E Charafe-Jauffret, C Tarpin, FB Ayed, P Viens, J Jacquemier, F Bertucci, D Birnbaum and M Chaffanet; Genome profiling of ERBB2-amplifief breast cancers. BMC Cancer, 2010, 10:539
Examples
data(cghInfo)
summary(cghInfo)