reactiontbl_to_gurobi {fbar}

Parse reaction table to Gurobi format

Description

This function is deprecated. github.com/Fl0Sch/ROI.plugin.gurobi is recommended instead.

Usage

reactiontbl_to_gurobi(reaction_table, regex_arrow = "<?[-=]+>")

Arguments

reaction_table

A data frame describing the metabolic model.

regex_arrow

Regular expression for the arrow splitting sides of the reaction equation.

Details

Parses a reaction table to give a list in Gurobi's input format. This function is a shorthand for reactiontbl_to_expanded followed by expanded_to_gurobi.

The reaction_table must have columns:

• abbreviation,

• equation,

• uppbnd,

• lowbnd, and

• obj_coef.

Value

A list suitable for input to Gurobi.

See Also

Other parsing_and_conversion: expanded_to_ROI(), expanded_to_glpk(), expanded_to_gurobi(), reactiontbl_to_expanded()