expanded_to_glpk {fbar} | R Documentation |
Parse a long format metabolic model to a glpk model
Description
This function is deprecated. ROI.plugin.glpk
is recommended instead.
Usage
expanded_to_glpk(reactions_expanded)
Arguments
reactions_expanded |
A list of data frames as output by |
Details
This parses the long format produced by reactiontbl_to_expanded
to a glpk model.
To install the Rglpk package in Linux, run sudo apt-get install libglpk-dev
in a terminal, and then run install.packages('Rglpk')
in R.
The reaction_table
must have columns:
-
abbreviation
, -
equation
, -
uppbnd
, -
lowbnd
, and -
obj_coef
.
Value
A list suitable for input to Rglpk
See Also
Other parsing_and_conversion:
expanded_to_ROI()
,
expanded_to_gurobi()
,
reactiontbl_to_expanded()
,
reactiontbl_to_gurobi()
[Package fbar version 0.6.0 Index]