specimen_type_grouping {epidm}

Specimen type grouping

Description

In order to help clean up an analysis based on a group of specimen types, a lookup table has been created to help group sampling sites. This is a manually updated list. If there are organisms missing, or new respeciates to be added, please raise and issue or push request on the epidm GitHub

Usage

specimen_type_grouping

Format

specimen_type

The primary specimen type with detail

specimen_group

A simple grouping of like specimen sites