enrichr {enrichR}

Gene enrichment using Enrichr

Description

Gene enrichment using Enrichr

Usage

enrichr(genes, databases = NULL)

Arguments

genes

(Required). Character vector of gene names or data.frame of gene names in in first column and a score between 0 and 1 in the other.

databases

(Required). Character vector of databases to search. See https://maayanlab.cloud/Enrichr/ for available databases.

Details

Gene enrichment using Enrichr

Value

Returns a list of data.frame of enrichment terms, p-values, ...

Author(s)

Wajid Jawaid [e-mail]

Examples

dbs <- listEnrichrDbs()
dbs <- c("GO_Molecular_Function_2018", "GO_Cellular_Component_2018",
         "GO_Biological_Process_2018")
enriched <- enrichr(c("Runx1", "Gfi1", "Gfi1b", "Spi1", "Gata1", "Kdr"), dbs)