R: Add or calculate pseudotime as distance from the root

calculate_pseudotime {dynwrap}

R Documentation

Add or calculate pseudotime as distance from the root

When calculating the pseudotime, the trajectory is expected to be rooted (see add_root())

calculate_pseudotime(trajectory)

add_pseudotime(trajectory, pseudotime = NULL)

`trajectory`	The trajectory as created by `infer_trajectory()` or `add_trajectory()`
`pseudotime`	Named vector containing the pseudotime for every cell. If not given, the pseudotime will be calculated.

The trajectory with pseudotime added, which is a named vector containing the pseudotime values for every cell.