adci {dynamAedes}

Summaries of mosquito abundance

Description

Summaries of mosquito abundance at each life stage and sub-stage for each day.

Usage

adci(
  input_sim = NULL,
  stage = NULL,
  sub_stage = NULL,
  breaks = c(0.25, 0.5, 0.75),
  eval_date = NULL,
  n.clusters = 1,
  type = "N"
)

Arguments

input_sim

matrix. dynamAedes compressed or uncompressed output matrix.

stage

character. "Eggs", "Juveniles", "Adults", or "DiapauseEggs" or any shorter attempt longer than 3 letters.

sub_stage

character. For uncompressed outputs only, defines the substage of interest. Please see cheat-sheet table.

breaks

numeric vector. Quantile breaks, default the first, the second and the third quartile: c(0.25,0.5,0.75).

eval_date

positive integer. Define the day to evaluate from the first day of introduction. Note that this can be particularly demanding in the case of spatial outputs.

n.clusters

integer. Number of parallel processes.

type

character. The type of output. Set "O" to force overall time-only summary over spatial. Default is "N" (normal).

Value

Returns a data frame or a raster with the summary of mosquito abundance at each life stage for each day.

Author(s)

Matteo Marcantonio [e-mail], Daniele Da Re [e-mail]