| icmp {dvir} | R Documentation |
DVI dataset: A large reference pedigree
Description
DVI dataset based loosely on the ICMP workshop material https://www.few.vu.nl/~ksn560/Block-III-PartI-KS-ISFG2017.pdf (page 18). There are 3 female victims, 2 male victims and 6 missing persons of both sexes. We have renamed the individuals and simulated data for 13 CODIS markers (see Details).
Usage
icmp
Format
A dviData object with the following content:
-
pm: A list of 5 singletons (victims). -
am: A reference pedigree with 6 genotyped members and 12 missing persons. -
missing: A vector containing the names of the missing persons.
Details
The 13 markers are, in order: CSF1PO, D3S1358, D5S818,D7S820,
D8S1179, D13S317, D16S539, D18S51, D21S11, FGA, TH01, TPOX,
and vWA.
Source code for the simulation, and a file containing the allele frequencies,
can be found in the data-raw folder of the GitHub repository:
https://github.com/magnusdv/dvir.
Examples
icmp
# plotDVI(icmp)
# Markers and allele frequencies
db = pedtools::getFreqDatabase(icmp$pm)
db