load_gmt {dslice} | R Documentation |
Load gene set file
Description
Load gene set from .gmt file
Usage
load_gmt(file)
Arguments
file |
Name of .gmt file which contains gene sets. Should be a tab-separated text file. Each row is a gene set. The first column is gene set name and the second is its description. Remaining columns are gene symbols of genes in this set. |
Value
A list with components:
set_name |
Vector of gene set names. |
set_description |
Vector of gene set descriptions. |
gene_symbol |
List of gene symbols in each gene set. |
Examples
# Gene set files are available after registration at Broad institute GSEA website
# http://www.broadinstitute.org/gsea
## Not run:
filename <- "C2.gmt"
geneset <- load_gmt(filename)
## End(Not run)
[Package dslice version 1.2.2 Index]