| readLineages {dowser} | R Documentation |
Read in all trees from a lineages file
readLineages(
file,
states = NULL,
palette = "Dark2",
run_id = "",
quiet = TRUE,
append = NULL,
format = "nexus",
type = "jointpars"
)
file |
IgPhyML lineage file |
states |
states in parsimony model |
palette |
palette for coloring internal nodes |
run_id |
id used for IgPhyML run |
quiet |
avoid printing rubbish on screen? |
append |
string appended to fasta files |
format |
format of input file with trees |
type |
Read in parsimony reconstructions or ancestral sequence reconstructions? "jointpars" reads in parsimony states, others read in sequences in internal nodes |
A list of phylo objects from file.