makeModelFile {dowser}

Make a parsimony model file

Description

makeModelFile Filler

Usage

makeModelFile(file, states, constraints = NULL, exceptions = NULL)

Arguments

file

model file name to write.

states

vector of states to include in model.

constraints

constraints to add to model.

exceptions

vector of comma-separated states that are exceptions to constraints

Details

Currently the only option for constraints is "irrev", which forbids switches moving from left to right in the states vector.

Value

Name of model file

See Also

readModelFile, getTrees, findSwitches