getSubTaxa {dowser}

R Documentation

Get the tip labels as part of a clade defined by an internal node

Description

getSubTaxa Gets the tip labels from a clade

Usage

getSubTaxa(node, tree)

Arguments

node	node number that defines the target clade
tree	phylo object

Value

A vector containing tip labels of the clade

Examples

# Get taxa from all subtrees
data(BiopsyTrees)
tree <- BiopsyTrees$trees[[8]]
all_subtrees <- lapply(1:length(tree$nodes), function(x)getSubTaxa(x, tree))

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