getDivergence {dowser} R Documentation

## Get divergence from root of tree for each tip

### Description

getDivergence get sum of branch lengths leading from the root of the tree. If the germline sequence is included in the tree, this will equal the germline divergence. If germline removed, this will equal the MRCA divergence

### Usage

getDivergence(phy, minlength = 0.001)


### Arguments

 phy Tree object minlength Branch lengths to collapse in trees

### Value

A named vector of each tip's divergence from the tree's root.

[Package dowser version 1.1.0 Index]