collapseNodes {dowser}

Collapse internal nodes with the same predicted sequence

Description

collapseNodes Node collapsing function.

Usage

collapseNodes(trees, tips = FALSE, check = TRUE)

Arguments

trees

a tibble of airrClone objects, the output of getTrees

tips

collapse tips to internal nodes? (experimental)

check

check that collapsed nodes are consistent with original tree

Details

Use plotTrees(trees)[[1]] + geom_label(aes(label=node)) + geom_tippoint() to show node labels, and getSeq to return internal node sequences

Value

A tibble with phylo objects that have had internal nodes collapsed.

See Also

getTrees