R: Collapse internal nodes with the same predicted sequence

collapseNodes {dowser}

R Documentation

Collapse internal nodes with the same predicted sequence

collapseNodes Node collapsing function.

collapseNodes(trees, tips = FALSE, check = TRUE)

`trees`	a tibble of `airrClone` objects, the output of getTrees
`tips`	collapse tips to internal nodes? (experimental)
`check`	check that collapsed nodes are consistent with original tree

Use plotTrees(trees)[[1]] + geom_label(aes(label=node)) + geom_tippoint() to show node labels, and getSeq to return internal node sequences

A tibble with phylo objects that have had internal nodes collapsed.