arp2gen |
Fast and simple conversion of arlequin (.arp) genotype files to genepop files, form within the 'R' environment. |

basicStats |
Claculate basic descriptive population parameters from a genepop genotype file |

bigDivPart |
Genetic differentiation statistics and their estimators for high throughput data (e.g. RAD-seq derived SNPS) |

Big_data |
Example infile for diveRsity package |

chiCalc |
Testing sample independence from genotype counts |

corPlot |
A function to plot the relationship between Gst, G'st, Theta, D (Jost) and the mean number of alleles at a locus. A reimplementation of 'corPlot'. This function will replace the old function in later version of the package. |

diffCalc |
A faster function for calculating genetic differentiation statistics |

diffPlot |
A function to plot pairwise statistics calculated by divPart. |

divBasic |
A function to calculate basic population parameters such as allelic richness, observed heterozygosity, as well as expected heterozygosity. |

divMigrate |
An experimental function for the detection of directional differentiation from microsatellite data. |

divOnline |
A function to launch a web app version of 'diveRsity' from the local system. |

divPart |
Genetic differentiation statistics and their estimators |

divRatio |
Calculates the standardised diversity ratios relative to a 'yardstick' reference population following Skrbinsek et al., 2012. |

divSimCo |
Similarity coefficients for co-dominant diploid genenotype data |

fastDivPart |
Genetic differentiation statistics and their estimators |

fstOnly |
A minimal function for the calculate of Weir & Cockerham's (1984) F_ST and F_IT from codominant molecular data in the genepop format. |

gpSampler |
Randomly sample a genepop file |

haploDiv |
A function, allowing the calculation of Weir & Cockerham's (1984) F_{ST} from haploid genotypes in the genepop |

inCalc |
A function to calculate locus informative for the inference of ancestry |

microPlexer |
Launches a 'shiny' app for the arrangement of microsatellite loci into size and fluorophore based multiplex groups. |

polyIn |
A function for calculating informativeness for the inference of ancestry from loci of any ploidy. |

pop_stats |
Example pop_stats data frame for use in the function 'divRatio' |

readGenepop |
A function to calculate allele frequencies from genepop files. |

snp2gen |
Conversion function for SNP nucleotide genotype matrix to a genepop file. |

SNPs |
Example input format for 'snp2gp' function |

Test_data |
Example infile for diveRsity package |