dilp_processing {dilp} | R Documentation |
Process raw leaf physiognomic data
Description
dilp_processing()
will typically only be called internally by dilp()
.
However, it can be used on its own to generate and view a processed DiLP
dataset that includes raw and derived physiognomic values useful for DiLP and
other physiognomic analyses. Returns a data frame.
Usage
dilp_processing(specimen_data)
Arguments
specimen_data |
A data frame containing specimen level leaf physiognomic
data. A good reference for how to put together the data: |
Value
A data frame containing cleaned and processed specimen level leaf physiognomic data. New variables calculated are:
Leaf area
Feret diameter
Feret diameter ratio (FDR)
Raw blade perimeter corrected (Raw blade perimeter - length of cut perimeter)
Internal raw blade perimeter corrected (Internal raw blade perimeter - length of cut perimeter)
Total tooth count
Total tooth count : internal perimeter (TC:IP)
Perimeter ratio
Petiole metric
Aspect ratio
Shape factor
Compactness
Tooth area
Tooth area : perimeter (TA:P)
Tooth area: internal perimeter (TA:IP)
Tooth area : blade area (TA:BA)
Average primary tooth area (Avg TA)
Tooth count : blade area (TC:BA)
Tooth count : perimeter (TC:P)
Examples
dilp_dataset <- dilp_processing(McAbeeExample)
dilp_dataset