gsi {dfoliatR} | R Documentation |
Calculate the growth suppression index
Description
This function removes the nonhost growth signal from a host tree-ring series.
Usage
gsi(input_series)
Arguments
input_series |
A |
Details
The growth suppression index (GSI) is referred to as the "corrected" series in OUTBREAK. It is calculated as:
GSI(i) = H(i) - (NH(i) - mean(NH)) sd(H)/sd(NH)
where H and NH are the host and nonhost tree-ring series as standardized
index values; i is the year, and the functions mean()
and sd()
are
applied to the common period.
gsi()
will rarely be run directly by a user. It is called from
defoliate_trees()
.
Value
A data frame with the two input columns (host and nonhost series) and 3 added columns:
The mean/sd adjusted non-host chronology,
The growth suppression index ("gsi") of the host series after subtraction of the adjusted nonhost chronology,
The normalized growth suppression index ("ngsi") generated by applying
scale()
to the gsi.