DendSer.dendrogram {dendextend} | R Documentation |
Tries to run DendSer on a dendrogram
Description
Implements dendrogram seriation. The function tries to turn the dend into hclust, on which it runs DendSer.
Also, if a distance matrix is missing, it will try to use the cophenetic distance.
Usage
DendSer.dendrogram(dend, ser_weight, ...)
Arguments
dend |
An object of class dendrogram |
ser_weight |
Used by cost function to evaluate ordering. For cost=costLS, this is a vector of object weights. Otherwise is a dist or symmetric matrix. passed to DendSer. If it is missing, the cophenetic distance is used instead. |
... |
parameters passed to DendSer |
Value
Numeric vector giving an optimal dendrogram order
See Also
DendSer
, DendSer.dendrogram ,
untangle_DendSer, rotate_DendSer
Examples
## Not run:
library(DendSer) # already used from within the function
hc <- hclust(dist(USArrests[1:4, ]), "ave")
dend <- as.dendrogram(hc)
DendSer.dendrogram(dend)
## End(Not run)
[Package dendextend version 1.17.1 Index]