| est_ptr {demic} | R Documentation |
Estimate PTRs using all input data as well as using subsets of contigs and samples
Description
Estimate PTRs using all input data as well as using subsets of contigs and samples
Usage
est_ptr(X)
Arguments
X |
dataframe with coverage matrix (column names: "log_cov", "GC_content", "sample", "contig", "length") |
Value
named list with results from all three methods all_ptr dataframe with the estimated PTRs on success, null otherwise
est_ptr: estimated PTR values
coefficient: coefficient of linear regression
pValue: p-value of linear regression
cor: correlation coefficient
correctY: corrected coverage
contigs_ptr dataframe with the estimated PTRs on success, null otherwise
est_ptr: estimated PTR values
coefficient: coefficient of linear regression
pValue: p-value of linear regression
cor: correlation coefficient
correctY: corrected coverage
samples_ptr dataframe with the estimated PTRs on success, null otherwise
est_ptr: estimated PTR values
coefficient: coefficient of linear regression
pValue: p-value of linear regression
cor: correlation coefficient
correctY: corrected coverage
Examples
est_ptrs_001 <- est_ptr(max_bin_003)
est_ptrs_001