compare_contig_subsets {demic}

Compares contig subset x against contig subset y

Description

Compares contig subset x against contig subset y

Usage

compare_contig_subsets(
  est_ptrs_x,
  est_ptrs_y,
  pipeline_x,
  pipeline_y,
  cor_cutoff,
  max_cor
)

Arguments

est_ptrs_x

PTR estimates from contig subset x

est_ptrs_y

PTR estimates from contig subset y

pipeline_x

pipeline for contig subset x

pipeline_y

pipeline for contig subset y

cor_cutoff

the correlation cutoff

max_cor

the max correlation

Value

a named list including the est_ptr dataframe and a max_cor value

• sample: sample

• est_ptr: PTR estimate

• coefficient: coefficient of linear regression

• pValue: p-value of linear regression

• cor: correlation coefficient

• correctY: corrected coverage

max_cor: the max correlation achieved