Identifies Signatures Present in a Tumor Sample
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Documentation for package ‘deconstructSigs’ version 1.8.0
Help Pages
| deconstructSigs-package | deconstructSigs |
| deconstructSigs | deconstructSigs |
| example.output | Example output of whichSignatures() |
| makePie | Plots the weights from whichSignatures() |
| mut.to.sigs.input | Converts mutation list to correct input format |
| plotSignatures | Plots the result from whichSignatures() |
| plotTumor | Plots a tumor profile |
| randomly.generated.tumors | Values for 100 randomly generated tumor samples |
| sample.mut.ref | Example input to mut.to.sigs.input() |
| signatures.cosmic | Published Signatures from Sanger COSMIC |
| signatures.nature2013 | Published Signatures from Alexandrov et al 2013 |
| tri.counts.exome | The counts of every trinuclotide frequency in an exome |
| tri.counts.genome | The counts of every trinuclotide frequency in a genome |
| vcf.to.sigs.input | Converts a VCF file to correct input format |
| whichSignatures | Which signatures are present |