write_fastq {debar} | R Documentation |
Output the denoised sequence to a fastq format with placeholder phred scores.
Description
Output the denoised sequence to a fastq format with placeholder phred scores.
Usage
write_fastq(x, ...)
## S3 method for class 'DNAseq'
write_fastq(x, ..., outfile = "denoised.fastq",
append = TRUE, keep_phred = TRUE, phred_placeholder = "#")
Arguments
x |
a DNAseq class object. |
... |
additional arguments to be passed between methods. |
outfile |
The name of the file to output the data to. Default is "denoised.fasta". |
append |
Should the ccs consensus sequence be appended to the output file?(TRUE) Or overwrite the file?(FALSE) Default is TRUE. |
keep_phred |
Should the original PHRED scores be kept in the output? Default is TRUE. |
phred_placeholder |
The character to input for the phred score line. Default is '#'. |
Value
a class object of code "DNAseq"
See Also
[Package debar version 0.1.1 Index]