query_GTEx {deTS} | R Documentation |
GTEx raw query data
Description
An example of RNA-Seq query data from GTEx data for tissue-specific enrichment analysis
Usage
data("query_GTEx")
Format
A data frame with average expression level of 18067 gene in 47 GTEx tissues.
Row is genes symbol and column is sample names.
Adipose - Subcutaneous Adipose - Visceral (Omentum) Adrenal Gland Artery - Aorta Artery - Coronary
OR4F5 0.0317 0.0284 0.0469 0.0133 0.0225
SAMD11 0.4451 2.3056 3.8928 3.5822 2.5632
NOC2L 21.9084 21.0439 19.4613 19.4929 19.8367
KLHL17 4.1406 4.4075 4.4227 5.0840 5.3749
PLEKHN1 0.4531 0.3452 1.1795 0.3081 0.3722
Details
nothing
Source
nothing
References
Pei G., Dai Y., Zhao Z., Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.
Examples
data(query_GTEx)