| query_ENCODE {deTS} | R Documentation |
ENCODE raw query data
Description
An example of RNA-Seq query data from ENCODE data for tissue-specific enrichment analysis
Usage
data("query_ENCODE")Format
A data frame with average expression level of 18661 genes in 44 ENCODE tissues.
Row is genes symbol and column is sample names.
Adrenal Gland Body of Pancreas Breast Epithelium Camera-type Eye Cerebellum
TSPAN6 11.64 5.390 11.04 24.65 13.238
TNMD 0.01 0.147 2.24 12.43 0.090
DPM1 18.82 9.812 14.21 24.02 10.505
SCYL3 3.81 2.593 5.63 10.50 3.783
C1orf112 1.64 2.308 2.86 14.61 7.345
Details
nothing
Source
nothing
References
Pei G., Dai Y., Zhao Z., Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.
Examples
data(query_ENCODE)