onto.MP {dcGOR}R Documentation

Mammalian Phenotype (MP).

Description

An R object that contains information on Mammalian Phenotype terms. These terms are organised as a direct acyclic graph (DAG), which is further stored as an object of the class 'igraph' (see http://igraph.org/r/doc/aaa-igraph-package.html). This data is prepared based on ftp://ftp.informatics.jax.org/pub/reports/MPheno_OBO.ontology.

Usage

data(onto.MP)

Value

an object of S4 class Onto. It has slots for "nodeInfo" and "adjMatrix"

References

Smith et al. (2009) The Mammalian Phenotype Ontology: enabling robust annotation and comparative analysis. Wiley Interdiscip Rev Syst Biol Med, 1:390-399.
Fang H and Gough J. (2013) dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. Nucleic Acids Res, 41(Database issue):D536-44.

Examples

data(onto.MP)
onto.MP

[Package dcGOR version 1.0.6 Index]