onto.HPPA {dcGOR}R Documentation

Human Phenotype Phenotypic Abnormality (HPPA).

Description

An R object that contains information on Human Phenotype Phenotypic Abnormality terms. These terms are organised as a direct acyclic graph (DAG), which is further stored as an object of the class 'igraph' (see http://igraph.org/r/doc/aaa-igraph-package.html). This data is prepared based on http://purl.obolibrary.org/obo/hp.obo.

Usage

data(onto.HPPA)

Value

an object of S4 class Onto. It has slots for "nodeInfo" and "adjMatrix"

References

Robinson et al. (2012) The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet, 83:610-615.
Fang H and Gough J. (2013) dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. Nucleic Acids Res, 41(Database issue):D536-44.

Examples

data(onto.HPPA)
onto.HPPA

[Package dcGOR version 1.0.6 Index]