Rfam2GOMF {dcGOR}R Documentation

Annotations of Rfam RNA families by Gene Ontology Molecular Function (GOMF).

Description

An object of class "Anno" that contains associations between Gene Ontology Molecular Function terms and Rfam RNA families. This data is prepared based on the Rfam database (see http://rfam.xfam.org) and http://geneontology.org/external2go/rfam2go.

Usage

data(Rfam2GOMF)

Value

an object of class Anno. It has slots for "annoData", "termData" and "domainData":

References

Gardner et al. (2011) Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res, 39(Database issue):D141-D145.

See Also

Anno-class

Examples

# load data
data(Rfam2GOMF)
Rfam2GOMF
# retrieve info on ontology terms
termData(Rfam2GOMF)
# retrieve info on Rfam RNAs
domainData(Rfam2GOMF)
# retrieve the first 5 rows and columns of annotation data
x <- annoData(Rfam2GOMF)[1:5,1:5]
x
# convert the above retrieval to the full matrix
as.matrix(x)

[Package dcGOR version 1.0.6 Index]