Pfam {dcGOR}R Documentation

Pfam domains (Pfam).

Description

An object of class "InfoDataFrame" that contains information on Pfam domains (Pfam). This data is prepared based on ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/database_files/pfamA.txt.gz.

Usage

data(Pfam)

Value

an object of class InfoDataFrame. It has slots for data and dimLabels:

References

Finn et al. (2014) The Pfam protein families database. Nucleic Acids Res, 42(Database issue):D222-D230.

See Also

InfoDataFrame-class

Examples

# load data
data(Pfam)
Pfam
# retrieve the dimension
dim(Pfam)
# retrieve names of columns
colNames(Pfam)
# retrieve the first 5 rows of data
Data(Pfam)[1:5,]

[Package dcGOR version 1.0.6 Index]