InterPro2GOBP {dcGOR}R Documentation

Annotations of InterPro domains by Gene Ontology Biological Process (GOBP).

Description

An object of class "Anno" that contains associations between Gene Ontology Biological Process terms and InterPro domains. This data is prepared based on the InterPro database (see http://www.ebi.ac.uk/interpro/) and ftp://anonymous@ftp.ebi.ac.uk/pub/databases/interpro/Current/interpro2go.

Usage

data(InterPro2GOBP)

Value

an object of class Anno. It has slots for "annoData", "termData" and "domainData":

References

Hunter et al. (2012) Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Database (Oxford), 2012:bar068.

See Also

Anno-class

Examples

# load data
data(InterPro2GOBP)
InterPro2GOBP
# retrieve info on ontology terms
termData(InterPro2GOBP)
# retrieve info on InterPro domains
domainData(InterPro2GOBP)
# retrieve the first 5 rows and columns of annotation data
x <- annoData(InterPro2GOBP)[1:5,1:5]
x
# convert the above retrieval to the full matrix
as.matrix(x)

[Package dcGOR version 1.0.6 Index]