uniqNet {dc3net}

Unique Network

Description

uniqNet makes the differential or common network list unique.

Usage

uniqNet(tops = c())

Arguments

tops

A data matrix that contains list of interactions.

Details

uniqNet removes the redundant interactions in the generated differential or common network. For ex. it is possible that the generated network can include both geneA-to-geneB and geneB-to-geneA interactions. uniqNet eliminates one of this interaction so the list of final network is unique.

Value

uniqNet returns a unique data matrix that includes network list with gene names, mim indexes, probe names, control indexes, control mutual information rates and control ranks.

Author(s)

Gokmen Altay

References

Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.

See Also

dc3net, maxofMIM, orderList, rankList, dc3netdif, dc3netcom