| orderList {dc3net} | R Documentation |
Order The List of Interactions
Description
orderList takes the data matrix generated by maxofMIM function and sort it according to mutual information values in increasing or decreasing order.
Usage
orderList(mylist, colindx=1, decreasing=TRUE)
Arguments
mylist |
The data matrix generated by maxofMIM function that rows are probe/gene names and columns are mutual information values, row numbers of each gene and row numbers of partner gene with highest mutual information value, respectively. |
colindx |
The number of column with mutual information values |
decreasing |
The order of sort. If the argument is set to FALSE, then the data matrix will be sort in increasing order. |
Details
orderList takes the data matrix generated by maxofMIM function and sort it according to the column number stated in colindx argument. The direction of order is set by decreasing argument.
Value
orderList returns a sorted data matrix that rows are probe/gene names and columns are mutual information values, row numbers of each gene and row numbers of partner gene with highest mutual information value, respectively.
Author(s)
Gokmen Altay
References
Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.