dc3netdif {dc3net}

Find Differential Network

Description

dc3netdif finds differential network list.

Usage

dc3netdif(netTemp, vals, rankdif, percent)

Arguments

netTemp

Test network, e.g. tumor network.

vals

Statistics in the other (control) condition.

rankdif

Predefined rank cut-off parameter.

percent

Predefined rate parameter.

Details

dc3netdif finds differential network list.

Value

dc3netdif returns differential network data matrix. The data matrix includes differential network list with gene names, mim indexes, probe names, control indexes, control mutual information rates and control ranks.

Author(s)

Gokmen Altay

References

Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.

See Also

dc3net