dc3netcom {dc3net}

Find Common Network

Description

dc3netcom finds common network list.

Usage

dc3netcom(netTemp, vals, rankdif, percent)

Arguments

netTemp

Test network, e.g. tumor network.

vals

Statistics in the other (control) condition.

rankdif

Predefined rank cut-off parameter.

percent

Predefined rate parameter.

Details

dc3netcom finds differential network list.

Value

dc3dif returns common network data matrix. The data matrix includes differential network list with gene names, mim indexes, probe names, control indexes, control mutual information rates and control ranks.

Author(s)

Gokmen Altay

References

Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.

See Also

dc3net