Functions for "Data Analysis in Vegetation Ecology"


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Documentation for package ‘dave’ version 2.0

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A C D E F L M N O P R S T V W

-- A --

aoc Analysis of concentration (AOC)
aocc Analysis of concentration (AOC)
aocc.default Analysis of concentration (AOC)

-- C --

ccost Cost function of 2 alternative classifications of rows in vegetation data
ccost.default Cost function of 2 alternative classifications of rows in vegetation data
ccost2 Cost function of 2 alternative classifications of rows in vegetation data
centroid Centroids of row groups (vegetation releves)
centroid.default Centroids of row groups (vegetation releves)

-- D --

dave Data Analysis in Vegetation Ecology
davesil Modified version of silhouette plotting
davesil.default Modified version of silhouette plotting
dircor Directional mantel correlation
dircor.default Directional mantel correlation
dircor2 Directional mantel correlation
dsil Modified version of silhouette plotting

-- E --

EKs Swiss forest vegetation data base 1972, site information
EKv Swiss forest vegetation data base 1972, vegetation information

-- F --

fitmarkov Approximating a Markov chain
fitmarkov.default Approximating a Markov chain
fspa Flexible shortest path adjustment
fspa.default Flexible shortest path adjustment
fspa2 Flexible shortest path adjustment

-- L --

ltim Lippe et al. 1985 data set, yr of observation
lveg Lippe et al. 1985 data set, vegetation data

-- M --

matrixplot Matrixplot of groups similarities
mtab Structuring vegetation data tables
Mtabs Structuring vegetation data tables
Mtabs.default Structuring vegetation data tables
mveg Ellenberg's 1956 meadow data
mxplot Matrixplot of groups similarities
mxplot.default Matrixplot of groups similarities

-- N --

nsit European beach forest data, site factors
nveg European beach forest data, vegetation

-- O --

orank Ranking by orthogonal components (RANK)
orank.default Ranking by orthogonal components (RANK)
orank1 Ranking by orthogonal components (RANK)
outlier Outlier detection
outlier.default Outlier detection
outly Outlier detection
overly Overly of multivariate time series
overly.default Overly of multivariate time series
overly2 Overly of multivariate time series

-- P --

pcaser Connecting time series in ordinations
pcaser.default Connecting time series in ordinations
pcaser2 Connecting time series in ordinations
pcoatest Plotting 6 variants of principal coordinates analysis
pcobiplot Computing and plotting a biplot ordination using principal coordinates analysis
pcobiplot.default Computing and plotting a biplot ordination using principal coordinates analysis
pcocoor Computing and plotting a biplot ordination using principal coordinates analysis
pcovar Plotting 6 variants of principal coordinates analysis
pcovar.default Plotting 6 variants of principal coordinates analysis
plot.aocc Analysis of concentration (AOC)
plot.davesil Modified version of silhouette plotting
plot.dircor Directional mantel correlation
plot.fitmarkov Approximating a Markov chain
plot.fspa Flexible shortest path adjustment
plot.Mtabs Structuring vegetation data tables
plot.mxplot Matrixplot of groups similarities
plot.orank Ranking by orthogonal components (RANK)
plot.outlier Outlier detection
plot.overly Overly of multivariate time series
plot.pcaser Connecting time series in ordinations
plot.pcobiplot Computing and plotting a biplot ordination using principal coordinates analysis
plot.pcovar Plotting 6 variants of principal coordinates analysis
plot.SNPsm The spatial and temporal model of succession in the Swiss National Park
plot.SNPtm The temporal model of succession in the Swiss National Park
plot.speedprof Plotting velocity profiles of multivariate time series
plot.vvelocity Printing ordinations of velocity and acceleration and differently transformed speed profiles
plottab Structuring vegetation data tables
plottabl Structuring vegetation data tables
print.ccost Cost function of 2 alternative classifications of rows in vegetation data
print.centroid Centroids of row groups (vegetation releves)
print.outlier Outlier detection
print.srank Ranking species by IndVal or F-value
psit Time scale (yr) for Soppensee pollen data
pveg Soppensee pollen data

-- R --

rcentroid Centroids of row groups (vegetation releves)
rfitmarkov Approximating a Markov chain

-- S --

setgroupsize Structuring vegetation data tables
sn59sit Time series from the Swiss National Park, 59 plots. Site data.
sn59veg Time series from the Swiss National Park, 59 plots. Vegetation data.
sn6sit Time series from the Swiss National Park, 6 plots. Site data.
sn6veg Time series from the Swiss National Park, 6 plots. Vegetation data.
sn7sit Time series from the Swiss National Park, 7 plots. Site data.
sn7veg Time series from the Swiss National Park, 6 plots. Vegetation data.
SNPsm The spatial and temporal model of succession in the Swiss National Park
SNPsm.default The spatial and temporal model of succession in the Swiss National Park
SNPsm2 The spatial and temporal model of succession in the Swiss National Park
SNPtm The temporal model of succession in the Swiss National Park
SNPtm.default The temporal model of succession in the Swiss National Park
SNPtm2 The temporal model of succession in the Swiss National Park
speedprof Plotting velocity profiles of multivariate time series
speedprof.default Plotting velocity profiles of multivariate time series
speedprof2 Plotting velocity profiles of multivariate time series
srank Ranking species by IndVal or F-value
srank.default Ranking species by IndVal or F-value
srank2 Ranking species by IndVal or F-value
ssind Indicator values of all species in data set "sveg"
ssit Schlaenggli site data
sspft Selected plant functional traits of all species in data set "sveg"
summary.Mtabs Structuring vegetation data tables
summary.orank Ranking by orthogonal components (RANK)
sveg Schlaenggli vegetation data

-- T --

tsit Time series from the Swiss National Park, Plot Tr6. Site data.
tveg Time series from the Swiss National Park, Plot Tr6. Vegetation data.

-- V --

vrsit Vraconnaz time series data, site factors and dates
vrveg Vraconnaz time series data, vegetation
vvelocity Printing ordinations of velocity and acceleration and differently transformed speed profiles
vvelocity.default Printing ordinations of velocity and acceleration and differently transformed speed profiles
vvelocity2 Printing ordinations of velocity and acceleration and differently transformed speed profiles

-- W --

wetsit Random sample of Swiss wetland vegetation, site information.
wetveg Random sample of Swiss wetland vegetation, vegetation information.
ws200 Four kilometre grid forest data of Switzerland, 200m2 plots
ws30 Four kilometre grid forest data of Switzerland, 30m2 plots
ws500 Four kilometre grid forest data of Switzerland, 500m2 plots
wssit Four kilometre grid forest data of Switzerland, site information