summary_matrix_to_phylo_all {datelife} | R Documentation |
Get minimum, median, mean, midpoint, and maximum summary chronograms from a
summary matrix of a datelifeResult
object.
Description
Get minimum, median, mean, midpoint, and maximum summary chronograms from a
summary matrix of a datelifeResult
object.
Usage
summary_matrix_to_phylo_all(
summ_matrix,
datelife_query = NULL,
target_tree = NULL,
total_distance = TRUE,
...
)
Arguments
summ_matrix |
Any summary patristic distance matrix, such as the ones obtained with |
datelife_query |
A |
target_tree |
A |
total_distance |
Whether the input |
... |
Arguments passed on to
|
Details
With this function users can choose the minimum, mean or maximum ages from
the summary matrix as calibration points to get a single summary chronogram.
Users get all three summary chronograms in a multiPhylo
object.
Value
A multiPhylo
object of length 5. It contains min, mean, median, midpoint, and max summary chronograms.