get_calibrations_datelifequery {datelife} | R Documentation |
Search and extract available secondary calibrations for taxon names in a given
datelifeQuery
object
Description
The function searches DateLife's local
database of phylogenetic trees with branch lengths proportional to time
(chronograms) with datelife_search()
, and extracts available node ages
for each pair of given taxon names with extract_calibrations_phylo()
.
Usage
get_calibrations_datelifequery(datelife_query = NULL, each = FALSE)
Arguments
datelife_query |
A |
each |
Boolean, default to |
Details
The function calls datelife_search()
with summary_format = "phylo_all"
to get all chronograms in the database
containing at least two taxa in input
, and generates a phylo
or multiPhylo
object object that will be passed to
extract_calibrations_phylo()
.
Value
An object of class calibrations
, which is a data.frame
(if
each = FALSE
) or a list of data.frames
(if each = TRUE
) of node
ages for each pair of taxon names. You can access the input
data from which
the calibrations were extracted with attributes(output)$chronograms.