| gl2gi {dartR.base} | R Documentation |
Converts a genind object into a genlight object
Description
Converts a genind object into a genlight object
Converts a genlight object to genind object
Usage
gi2gl(gi, parallel = FALSE, verbose = NULL)
gl2gi(x, probar = FALSE, verbose = NULL)
Arguments
gi |
A genind object [required]. |
parallel |
Switch to deactivate parallel version. It might not be worth to run it parallel most of the times [default FALSE]. |
verbose |
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity]. |
x |
A genlight object [required]. |
probar |
If TRUE, a progress bar will be displayed for long loops [default TRUE]. |
Details
Be aware due to ambiguity which one is the reference allele a combination of gi2gl(gl2gi(gl)) does not return an identical object (but in terms of analysis this conversions are equivalent)
This function uses a faster version of df2genind (from the adegenet package)
Value
A genlight object, with all slots filled.
A genind object, with all slots filled.
Author(s)
Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)
See Also
Other linker:
gl2bayesAss(),
gl2bayescan(),
gl2bpp(),
gl2demerelate(),
gl2eigenstrat(),
gl2faststructure(),
gl2gds(),
gl2genalex(),
gl2genepop(),
gl2geno(),
gl2hiphop(),
gl2phylip(),
gl2plink(),
gl2related(),
gl2sa(),
gl2structure(),
gl2treemix(),
gl2vcf()
Other linker:
gl2bayesAss(),
gl2bayescan(),
gl2bpp(),
gl2demerelate(),
gl2eigenstrat(),
gl2faststructure(),
gl2gds(),
gl2genalex(),
gl2genepop(),
gl2geno(),
gl2hiphop(),
gl2phylip(),
gl2plink(),
gl2related(),
gl2sa(),
gl2structure(),
gl2treemix(),
gl2vcf()