| gl2geno {dartR.base} | R Documentation |
Converts a genlight object to geno format from package LEA
Description
The function converts a genlight object (SNP or presence/absence i.e. SilicoDArT data) into a file in the 'geno' and the 'lfmm' formats from (package LEA).
Usage
gl2geno(x, outfile = "gl_geno", outpath = NULL, verbose = NULL)
Arguments
x |
Name of the genlight object containing the SNP or presence/absence (SilicoDArT) data [required]. |
outfile |
File name of the output file [default 'gl_geno']. |
outpath |
Path where to save the output file [default global working directory or if not specified, tempdir()]. |
verbose |
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2, unless specified using gl.set.verbosity]. |
Value
returns no value (i.e. NULL)
Author(s)
Custodian: Luis Mijangos (Post to https://groups.google.com/d/forum/dartr)
See Also
Other linker:
gl2bayesAss(),
gl2bayescan(),
gl2bpp(),
gl2demerelate(),
gl2eigenstrat(),
gl2faststructure(),
gl2gds(),
gl2genalex(),
gl2genepop(),
gl2gi(),
gl2hiphop(),
gl2phylip(),
gl2plink(),
gl2related(),
gl2sa(),
gl2structure(),
gl2treemix(),
gl2vcf()
Examples
# SNP data
gl2geno(testset.gl, outpath=tempdir())
# Tag P/A data
gl2geno(testset.gs, outpath=tempdir())