| gl.rename.pop {dartR.base} | R Documentation |
Renames a population in a genlight object
Description
Individuals are assigned to populations based on the specimen metadata data file (csv) used with gl.read.dart(). This script renames a nominated population. The script returns a genlight object with the new population name.
Usage
gl.rename.pop(x, old = NULL, new = NULL, verbose = NULL)
Arguments
x |
Name of the genlight object containing SNP genotypes [required]. |
old |
Name of population to be changed [required]. |
new |
New name for the population [required]. |
verbose |
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity]. |
Value
A genlight object with the new population name.
Author(s)
Custodian: Arthur Georges – Post to https://groups.google.com/d/forum/dartr
See Also
Other data manipulation:
gl.define.pop(),
gl.drop.ind(),
gl.drop.loc(),
gl.drop.pop(),
gl.edit.recode.pop(),
gl.impute(),
gl.join(),
gl.keep.ind(),
gl.keep.loc(),
gl.keep.pop(),
gl.make.recode.ind(),
gl.merge.pop(),
gl.reassign.pop(),
gl.recode.ind(),
gl.recode.pop(),
gl.sample(),
gl.sim.genotypes(),
gl.sort(),
gl.subsample.ind(),
gl.subsample.loc()
Examples
gl <- gl.rename.pop(testset.gl, old='EmsubRopeMata', new='Outgroup')