gl.rename.pop {dartR.base}R Documentation

Renames a population in a genlight object

Description

Individuals are assigned to populations based on the specimen metadata data file (csv) used with gl.read.dart(). This script renames a nominated population. The script returns a genlight object with the new population name.

Usage

gl.rename.pop(x, old = NULL, new = NULL, verbose = NULL)

Arguments

x

Name of the genlight object containing SNP genotypes [required].

old

Name of population to be changed [required].

new

New name for the population [required].

verbose

Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].

Value

A genlight object with the new population name.

Author(s)

Custodian: Arthur Georges – Post to https://groups.google.com/d/forum/dartr

See Also

Other data manipulation: gl.define.pop(), gl.drop.ind(), gl.drop.loc(), gl.drop.pop(), gl.edit.recode.pop(), gl.impute(), gl.join(), gl.keep.ind(), gl.keep.loc(), gl.keep.pop(), gl.make.recode.ind(), gl.merge.pop(), gl.reassign.pop(), gl.recode.ind(), gl.recode.pop(), gl.sample(), gl.sim.genotypes(), gl.sort(), gl.subsample.ind(), gl.subsample.loc()

Examples

   gl <- gl.rename.pop(testset.gl, old='EmsubRopeMata', new='Outgroup')
   

[Package dartR.base version 0.65 Index]