| gl.define.pop {dartR.base} | R Documentation |
Defines a new population in a genlight object for specified individuals
Description
The script reassigns existing individuals to a new population and removes their existing population assignment. The script returns a genlight object with the new population assignment.
Usage
gl.define.pop(x, ind.list, new, verbose = NULL)
Arguments
x |
Name of the genlight object containing SNP genotypes [required]. |
ind.list |
A list of individuals to be assigned to the new population [required]. |
new |
Name of the new population [required]. |
verbose |
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity]. |
Value
A genlight object with the redefined population structure.
Author(s)
Custodian: Arthur Georges – Post to https://groups.google.com/d/forum/dartr
See Also
Other data manipulation:
gl.drop.ind(),
gl.drop.loc(),
gl.drop.pop(),
gl.edit.recode.pop(),
gl.impute(),
gl.join(),
gl.keep.ind(),
gl.keep.loc(),
gl.keep.pop(),
gl.make.recode.ind(),
gl.merge.pop(),
gl.reassign.pop(),
gl.recode.ind(),
gl.recode.pop(),
gl.rename.pop(),
gl.sample(),
gl.sim.genotypes(),
gl.sort(),
gl.subsample.ind(),
gl.subsample.loc()
Examples
popNames(testset.gl)
gl <- gl.define.pop(testset.gl, ind.list=c('AA019073','AA004859'),
new='newguys')
popNames(gl)
indNames(gl)[pop(gl)=='newguys']