solver {cvasi}

Calls ODE solver for a particular model

Description

Please refer to the Modeling Howto vignette on how to implement custom models by overloading the solver function.

Usage

solver(scenario, times, ...)

## S4 method for signature 'ANY'
solver(scenario, times, ...)

## S4 method for signature 'GutsRedSd'
solver(scenario, times, ...)

## S4 method for signature 'GutsRedIt'
solver(scenario, times, ...)

## S4 method for signature 'LemnaSchmittScenario'
solver(scenario, times, ...)

## S4 method for signature 'LemnaSetacScenario'
solver(scenario, times, ...)

## S4 method for signature 'MyrioExpScenario'
solver(scenario, times, ...)

## S4 method for signature 'MyrioLogScenario'
solver(scenario, times, ...)

## S4 method for signature 'DebAbj'
solver(scenario, times, ...)

## S4 method for signature 'DebDaphnia'
solver(
  scenario,
  times,
  approx = c("linear", "constant"),
  f = 1,
  method = "ode45",
  ...
)

## S4 method for signature 'AlgaeWeberScenario'
solver(
  scenario,
  times,
  approx = c("linear", "constant"),
  f = 1,
  method = "lsoda",
  hmax = 0.1,
  ...
)

## S4 method for signature 'AlgaeTKTDScenario'
solver(
  scenario,
  times,
  approx = c("linear", "constant"),
  f = 1,
  method = "lsoda",
  hmax = 0.1,
  ...
)

## S4 method for signature 'AlgaeSimpleScenario'
solver(
  scenario,
  times,
  approx = c("linear", "constant"),
  f = 1,
  method = "ode45",
  hmax = 0.01,
  ...
)

Arguments

scenario

scenario object

times

numeric vector of output times, overrides any scenario setting

...

additional parameters passed on to deSolve::ode()

approx

string, interpolation method of exposure series, see stats::approxfun()

f

if approx="constant", a number between 0 and 1 inclusive, see stats::approxfun()

method

string, numerical solver used by deSolve::ode()

hmax

numeric, maximum step length in time, see deSolve::ode()

Value

data.frame with simulation results

Methods (by class)

• solver(ANY): Default solver, raises an error

• solver(GutsRedSd): Numerically integrates GUTS-RED-SD models

• solver(GutsRedIt): Numerically integrates GUTS-RED-IT models

• solver(LemnaSchmittScenario): Numerically integrates Lemna_Schmitt models

• solver(LemnaSetacScenario): Numerically integrates Lemna_SETAC models

• solver(MyrioExpScenario): Numerically integrates Myrio models

• solver(MyrioLogScenario): Numerically integrates Myrio_log models

• solver(DebAbj): Numerically integrates DEB_abj models

• solver(DebDaphnia): Numerically integrates DEB_Daphnia models

• solver(AlgaeWeberScenario): numerically integrates Algae_Weber models

• solver(AlgaeTKTDScenario): numerically integrates Algae_TKTD models

• solver(AlgaeSimpleScenario): numerically integrates Algae_Simple models