Cedric IO Utilities {cubfits}

Cedric IO Utilities

Description

This utility function provides basic IO by Cedric.

Usage

  readGenome(fn.genome, ex.sh.aa = 0, rm.first.aa = 0)
  
  normalizeDataSet(data)

Arguments

fn.genome

Fasta file with sequences

ex.sh.aa

Ignore sequences with a length less than ex.sh.aa. (After removal of the first rm.first.aa amino acids)

rm.first.aa

Remove the first rm.first.aa amino acids (after start codon)

data

Vector to be normalized. Means will be set to 1

Details

under development

Value

under development

Author(s)

Cedric Landerer [e-mail].

References

https://github.com/clandere/cubfits/

See Also

under development

Examples

  ## Not run: 
    library(cubfits)
    seq.string <- readGenome("my_genome.fasta", 150, 10)
  
## End(Not run)