yeast_exp {cubar} | R Documentation |
yeast mRNA expression levels
Description
Yeast mRNA FPKM determined from rRNA-depleted (RiboZero) total RNA-Seq libraries. RUN1_0_WT and RUN2_0_WT (0 min after RNA Pol II repression) were averaged and used here.
Usage
yeast_exp
Format
a data.frame with 6717 rows and three columns:
- gene_id
gene ID
- gene_name
gene name
- fpkm
mRNA expression level in Fragments per kilobase per million reads
Source
<https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57385>
References
Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, Olson S, Weinberg D, Baker KE, Graveley BR, et al. 2015. Codon optimality is a major determinant of mRNA stability. Cell 160:1111-1124.
Examples
head(yeast_exp)
[Package cubar version 0.6.0 Index]